On the purchase date, the fare and PFC amounts valid on the start date of the trip will be applied to the sector that is being changed. (The booking class and seasonality of each flight will apply to the outbound and return flight boarding dates.)
A Flex round trip is purchased on 5/25, with an outbound part (7/1, ANA 253, Tokyo/Haneda to Fukuoka) and an inbound part (10/3, ANA 258, Fukuoka to Tokyo/Haneda).
After boarding the outbound flight on 7/1, if changes are made to the reserved flight for the inbound part (10/4, ANA 258, Fukuoka to Tokyo/Haneda) on 7/3, the fare and PFC amounts valid for the start date of the trip (7/1) on the purchase date (5/25) will be applied to the inbound part.